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    SUMO1P1 SUMO1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 391257, updated on 23-Nov-2023

    Summary

    Official Symbol
    SUMO1P1provided by HGNC
    Official Full Name
    SUMO1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:33148
    See related
    AllianceGenome:HGNC:33148
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    UBL2; UBL6; PIC1L
    Summary
    Enables identical protein binding activity. Involved in PML body organization and protein sumoylation. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See SUMO1P1 in Genome Data Viewer
    Location:
    20q13.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (53874498..53875709, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (55647868..55649080, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (52491037..52492248, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13052 Neighboring gene uncharacterized LOC124904935 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:52491437-52492636 Neighboring gene MPRA-validated peak4276 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:52522628-52523827 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:52551551-52552052 Neighboring gene Sharpr-MPRA regulatory region 3819 Neighboring gene uncharacterized LOC124904936 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18139 Neighboring gene brain enriched myelin associated protein 1 Neighboring gene microRNA 4756

    Genomic regions, transcripts, and products

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • ubiquitin-like 2
    • ubiquitin-like 6

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein tag activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transcription factor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables ubiquitin-like protein ligase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in PML body organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein sumoylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein sumoylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein sumoylation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    colocalizes_with PML body IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002189.3 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC005220

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      53874498..53875709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      55647868..55649080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)