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    LINC01551 long intergenic non-protein coding RNA 1551 [ Homo sapiens (human) ]

    Gene ID: 387978, updated on 12-Jul-2019

    Summary

    Official Symbol
    LINC01551provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1551provided by HGNC
    Primary source
    HGNC:HGNC:19828
    See related
    Ensembl:ENSG00000186960
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C14orf23; c14_5148
    Expression
    Biased expression in brain (RPKM 1.5) and testis (RPKM 0.6) See more

    Genomic context

    See LINC01551 in Genome Data Viewer
    Location:
    14q12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (28772704..28794794)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (29241910..29264000)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene FOXG1 antisense RNA 1 Neighboring gene VISTA enhancer hs1064 Neighboring gene long intergenic non-protein coding RNA 2282 Neighboring gene forkhead box G1 Neighboring gene long intergenic non-protein coding RNA 2281 Neighboring gene long intergenic non-protein coding RNA 2327 Neighboring gene Vac14, PIKFYVE complex component pseudogene Neighboring gene long intergenic non-protein coding RNA 2326 Neighboring gene RNA, U6 small nuclear 864, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.
    NHGRI GWA Catalog

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026731.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL049777, BX111279, BX248251
    2. NR_026732.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (2) uses an alternate 3' splice pattern, compared to variant 1.
      Source sequence(s)
      AI204146, AL049777, BM839073
      Related
      ENST00000552957.5

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

      Range
      28772704..28794794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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