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    C10orf143 chromosome 10 open reading frame 143 [ Homo sapiens (human) ]

    Gene ID: 387723, updated on 17-Jun-2019

    Summary

    Official Symbol
    C10orf143provided by HGNC
    Official Full Name
    chromosome 10 open reading frame 143provided by HGNC
    Primary source
    HGNC:HGNC:48677
    See related
    Ensembl:ENSG00000237489
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC00959
    Expression
    Ubiquitous expression in thyroid (RPKM 1.2), prostate (RPKM 1.0) and 25 other tissues See more
    Orthologs

    Genomic context

    See C10orf143 in Genome Data Viewer
    Location:
    10q26.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (130034490..130110848, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (131862160..131909081, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378558 Neighboring gene EBF transcription factor 3 Neighboring gene VISTA enhancer hs232 Neighboring gene uncharacterized LOC102724883 Neighboring gene uncharacterized LOC105378561 Neighboring gene CTAGE family member 7, pseudogene Neighboring gene glutaredoxin 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    uncharacterized protein C10orf143
    Names
    long intergenic non-protein coding RNA 959

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355042.2NP_001341971.1  uncharacterized protein C10orf143

      Status: VALIDATED

      Source sequence(s)
      AL139123
      Consensus CDS
      CCDS86157.1
      Related
      ENSP00000490233.1, ENST00000637128.2

    RNA

    1. NR_034125.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK094118, AL139123, AW135007, EU250747
      Related
      ENST00000647406.1
    2. NR_149170.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139123

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

      Range
      130034490..130110848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024448009.1XP_024303777.1  uncharacterized protein C10orf143 isoform X3

      Related
      ENSP00000496273.1, ENST00000643056.1
    2. XM_024448007.1XP_024303775.1  uncharacterized protein C10orf143 isoform X1

    3. XM_024448008.1XP_024303776.1  uncharacterized protein C10orf143 isoform X2

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