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    TPTEP1 TPTE pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 387590, updated on 17-Jun-2019

    Summary

    Official Symbol
    TPTEP1provided by HGNC
    Official Full Name
    TPTE pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:43648
    See related
    Ensembl:ENSG00000100181
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    psiTPTE22
    Expression
    Broad expression in thyroid (RPKM 2.3), salivary gland (RPKM 2.1) and 24 other tissues See more

    Genomic context

    See TPTEP1 in Genome Data Viewer
    Location:
    22q11.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (16601911..16648830)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (17082801..17129720)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene chaperonin containing TCP1 subunit 8 like 2 Neighboring gene fatty acid binding protein 5 pseudogene 11 Neighboring gene ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene Neighboring gene solute carrier family 25 member 15 pseudogene 5 Neighboring gene uncharacterized LOC112268292 Neighboring gene poly(ADP-ribose) polymerase family member 4 pseudogene 3 Neighboring gene ankyrin repeat domain 62 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • TPTE pseudogene
    • endogenous retroviral protease pseudogene
    • transmembrane phosphatase with tensin homology pseudogene 1

    Clone Names

    • FLJ37713, MGC104374, AC005301.5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001591.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AY219889
      Related
      ENST00000400593.6

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

      Range
      16601911..16648830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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