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    ZNF829 zinc finger protein 829 [ Homo sapiens (human) ]

    Gene ID: 374899, updated on 17-Jun-2019

    Summary

    Official Symbol
    ZNF829provided by HGNC
    Official Full Name
    zinc finger protein 829provided by HGNC
    Primary source
    HGNC:HGNC:34032
    See related
    Ensembl:ENSG00000185869
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 3.5), ovary (RPKM 1.1) and 24 other tissues See more
    Orthologs

    Genomic context

    See ZNF829 in Genome Data Viewer
    Location:
    19q13.12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (36888124..36916387, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (37379026..37407193, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC728485 Neighboring gene ZNF790 antisense RNA 1 Neighboring gene zinc finger protein 790 Neighboring gene zinc finger protein 345 Neighboring gene ribosomal protein L31 pseudogene 61 Neighboring gene zinc finger protein 568 Neighboring gene zinc finger protein 420 Neighboring gene uncharacterized LOC105372390 Neighboring gene Sharpr-MPRA regulatory region 11816 Neighboring gene zinc finger protein 585A

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ27459, MGC129866, MGC129867, DKFZp779O175, DKFZp686K21248

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity, RNA polymerase II-specific ISA
    Inferred from Sequence Alignment
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037232.3NP_001032309.2  zinc finger protein 829 isoform 2

      See identical proteins and their annotated locations for NP_001032309.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream start codon, compared to variant 1. The encoded isoform (2) is shorter at the N-terminus, compared to isoform 1.
      Source sequence(s)
      AC008733, BC107132, BX538288, DB031896
      Consensus CDS
      CCDS42557.1
      UniProtKB/Swiss-Prot
      Q3KNS6
      Related
      ENSP00000429266.1, ENST00000391711.7
      Conserved Domains (3) summary
      smart00349
      Location:3595
      KRAB; krueppel associated box
      COG5048
      Location:158344
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:214234
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. NM_001171979.2NP_001165450.1  zinc finger protein 829 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (1).
      Source sequence(s)
      AC008733, BX538288
      Consensus CDS
      CCDS59380.1
      UniProtKB/Swiss-Prot
      Q3KNS6
      Related
      ENSP00000428679.2, ENST00000520965.5
      Conserved Domains (6) summary
      smart00349
      Location:116176
      KRAB; krueppel associated box
      COG5048
      Location:149425
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:295315
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:238259
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:116155
      KRAB; KRAB box
      pfam13465
      Location:335359
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

      Range
      36888124..36916387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011526933.2XP_011525235.1  zinc finger protein 829 isoform X1

      See identical proteins and their annotated locations for XP_011525235.1

      UniProtKB/Swiss-Prot
      Q3KNS6
      Conserved Domains (3) summary
      smart00349
      Location:3595
      KRAB; krueppel associated box
      COG5048
      Location:158344
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:214234
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_005258876.4XP_005258933.1  zinc finger protein 829 isoform X1

      See identical proteins and their annotated locations for XP_005258933.1

      UniProtKB/Swiss-Prot
      Q3KNS6
      Conserved Domains (3) summary
      smart00349
      Location:3595
      KRAB; krueppel associated box
      COG5048
      Location:158344
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:214234
      ZF_C2H2; C2H2 Zn finger [structural motif]
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