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    Dmac2 distal membrane arm assembly complex 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361520, updated on 18-Apr-2019

    Summary

    Official Symbol
    Dmac2provided by RGD
    Official Full Name
    distal membrane arm assembly complex 2provided by RGD
    Primary source
    RGD:1549698
    See related
    Ensembl:ENSRNOG00000020596
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Atp5sl
    Expression
    Biased expression in Heart (RPKM 172.2), Kidney (RPKM 140.6) and 9 other tissues See more
    Orthologs

    Genomic context

    See Dmac2 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (82413171..82419157)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (83674728..83680662)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102549342 Neighboring gene uncharacterized LOC102549282 Neighboring gene glutamate-rich 4 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 Neighboring gene branched chain keto acid dehydrogenase E1 subunit alpha

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Clone Names

    • MGC109149

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    contributes_to ubiquitin-protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrial respiratory chain complex I assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrial respiratory chain complex I assembly ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    mitochondrial respiratory chain complex I assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    SCF ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with mitochondrial respiratory chain complex I IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with mitochondrial respiratory chain complex I ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    colocalizes_with mitochondrial respiratory chain complex I ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    distal membrane-arm assembly complex protein 2; ATP synthase subunit s-like protein
    Names
    ATP5S-like

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009705.1NP_001009705.1  distal membrane-arm assembly complex protein 2

      See identical proteins and their annotated locations for NP_001009705.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088283
      UniProtKB/Swiss-Prot
      Q5I0I4
      Related
      ENSRNOP00000027960.5, ENSRNOT00000027960.6
      Conserved Domains (1) summary
      sd00034
      Location:147172
      LRR_AMN1; leucine-rich repeat [structural motif]

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      82413171..82419157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017589351.1XP_017444840.1  ATP synthase subunit s-like protein isoform X1

    2. XM_017589352.1XP_017444841.1  ATP synthase subunit s-like protein isoform X2

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      75569238..75575161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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