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    C6orf58 chromosome 6 open reading frame 58 [ Homo sapiens (human) ]

    Gene ID: 352999, updated on 15-Jun-2019

    Summary

    Official Symbol
    C6orf58provided by HGNC
    Official Full Name
    chromosome 6 open reading frame 58provided by HGNC
    Primary source
    HGNC:HGNC:20960
    See related
    Ensembl:ENSG00000184530
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LEG1
    Expression
    Biased expression in duodenum (RPKM 281.8), stomach (RPKM 185.1) and 1 other tissue See more
    Orthologs

    Genomic context

    See C6orf58 in Genome Data Viewer
    Location:
    6q22.33
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (127577174..127591818)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (127898319..127912963)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene KIAA0408 Neighboring gene SOGA family member 3 Neighboring gene uncharacterized LOC107986642 Neighboring gene uncharacterized LOC105377995 Neighboring gene uncharacterized LOC105377996 Neighboring gene chromosome 6 open reading frame 58 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC72003

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    extracellular exosome HDA PubMed 
    extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    protein LEG1 homolog
    Names
    UPF0762 protein C6orf58
    liver enriched gene 1 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001010905.3NP_001010905.1  protein LEG1 homolog precursor

      See identical proteins and their annotated locations for NP_001010905.1

      Status: VALIDATED

      Source sequence(s)
      AK303850, AL583806
      Consensus CDS
      CCDS34533.1
      UniProtKB/Swiss-Prot
      Q6P5S2
      Related
      ENSP00000328069.7, ENST00000329722.8
      Conserved Domains (1) summary
      pfam05612
      Location:30305
      DUF781; Mouse protein of unknown function (DUF781)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

      Range
      127577174..127591820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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