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    NPHP3-AS1 NPHP3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 348808, updated on 17-Jun-2019

    Summary

    Official Symbol
    NPHP3-AS1provided by HGNC
    Official Full Name
    NPHP3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:24129
    See related
    Ensembl:ENSG00000248724
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NCRNA00119
    Expression
    Low expression observed in reference dataset See more

    Genomic context

    See NPHP3-AS1 in Genome Data Viewer
    Location:
    3q22.1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (132721750..132874211)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (132441186..132593050)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene NPHP3-ACAD11 readthrough (NMD candidate) Neighboring gene acyl-CoA dehydrogenase family member 11 Neighboring gene heat shock protein family A (Hsp70) member pseudogene 19 Neighboring gene ubiquitin like modifier activating enzyme 5 Neighboring gene nephrocystin 3 Neighboring gene uncharacterized LOC105374115 Neighboring gene Sharpr-MPRA regulatory region 13907 Neighboring gene Sharpr-MPRA regulatory region 9074 Neighboring gene transmembrane protein 108

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Other Names

    • NPHP3 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002811.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC055732, BC036463, BC039375, CA425131
      Related
      ENST00000504440.1
    2. NR_152743.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC036463
      Related
      ENST00000489343.5

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

      Range
      132721750..132874211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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