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    H1FX-AS1 H1FX antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 339942, updated on 17-Jun-2019

    Summary

    Official Symbol
    H1FX-AS1provided by HGNC
    Official Full Name
    H1FX antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:27953
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C3orf47
    Expression
    Ubiquitous expression in fat (RPKM 3.5), prostate (RPKM 1.9) and 23 other tissues See more

    Genomic context

    See H1FX-AS1 in Genome Data Viewer
    Location:
    3q21.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (129316271..129324569)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (129035114..129043412)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene coatomer protein complex subunit gamma 1 Neighboring gene microRNA 6826 Neighboring gene 5-hydroxymethylcytosine binding, ES cell specific Neighboring gene H1 histone family member X Neighboring gene nucleoporin 210 pseudogene 3 Neighboring gene microtubule affinity regulating kinase 2 pseudogene 3 Neighboring gene microtubule affinity regulating kinase 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • H1FX antisense RNA 1 (non-protein coding)

    Clone Names

    • FLJ34151, MGC126788

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026991.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC137695, AL040547, AL353963, BC093941, BM709882, BU732259, DA883170

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

      Range
      129316271..129324569
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001025468.1: Suppressed sequence

      Description
      NM_001025468.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein and the transcript is a nonsense-mediated mRNA decay (NMD) candidate.
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