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    MYPOP Myb related transcription factor, partner of profilin [ Homo sapiens (human) ]

    Gene ID: 339344, updated on 12-May-2019

    Summary

    Official Symbol
    MYPOPprovided by HGNC
    Official Full Name
    Myb related transcription factor, partner of profilinprovided by HGNC
    Primary source
    HGNC:HGNC:20178
    See related
    Ensembl:ENSG00000176182 MIM:617861
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    P42pop
    Expression
    Ubiquitous expression in brain (RPKM 2.5), spleen (RPKM 2.4) and 25 other tissues See more
    Orthologs

    Genomic context

    See MYPOP in Genome Data Viewer
    Location:
    19q13.32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 19 NC_000019.10 (45890020..45902619, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (46393281..46405862, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene HNF1 motif-containing MPRA enhancer 100 Neighboring gene interferon regulatory factor 2 binding protein 1 Neighboring gene nanos C2HC-type zinc finger 2 Neighboring gene NOVA alternative splicing regulator 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    myb-related transcription factor, partner of profilin
    Names
    myb-related protein p42POP
    p42 Myb-related transcription factor, partner of profilin

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012643.4NP_001012661.1  myb-related transcription factor, partner of profilin

      See identical proteins and their annotated locations for NP_001012661.1

      Status: VALIDATED

      Source sequence(s)
      AC008623, BC044311, BU196283
      Consensus CDS
      CCDS33055.1
      UniProtKB/Swiss-Prot
      Q86VE0
      Related
      ENSP00000325402.4, ENST00000322217.6
      Conserved Domains (1) summary
      pfam13873
      Location:1692
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p12 Primary Assembly

      Range
      45890020..45902619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017026743.2XP_016882232.1  myb-related transcription factor, partner of profilin isoform X2

    2. XM_017026742.2XP_016882231.1  myb-related transcription factor, partner of profilin isoform X1

    3. XM_024451484.1XP_024307252.1  myb-related transcription factor, partner of profilin isoform X3

      Conserved Domains (1) summary
      pfam13873
      Location:159235
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
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