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    Htatsf1 HIV-1 Tat specific factor 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 317612, updated on 13-Aug-2019

    Summary

    Official Symbol
    Htatsf1provided by RGD
    Official Full Name
    HIV-1 Tat specific factor 1provided by RGD
    Primary source
    RGD:1563377
    See related
    Ensembl:ENSRNOG00000027761
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563377
    Expression
    Biased expression in Thymus (RPKM 106.6), Muscle (RPKM 104.7) and 9 other tissues See more
    Orthologs

    Genomic context

    See Htatsf1 in Genome Data Viewer
    Location:
    Xq37
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (159514053..159528281)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (154143843..154158071)

    Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 112 like Neighboring gene non-histone chromosomal protein HMG-17-like Neighboring gene bombesin receptor subtype 3 Neighboring gene vestigial-like family member 1 Neighboring gene similar to heat shock protein 1, beta

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    U2 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U2-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    HIV Tat-specific factor 1
    Names
    HIV TAT specific factor 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108259.1NP_001101729.1  HIV Tat-specific factor 1

      See identical proteins and their annotated locations for NP_001101729.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474106
      UniProtKB/TrEMBL
      D4A997
      Related
      ENSRNOP00000061583.2, ENSRNOT00000065636.3
      Conserved Domains (3) summary
      COG0724
      Location:84218
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12281
      Location:132222
      RRM1_TatSF1_like; RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
      cd12282
      Location:263353
      RRM2_TatSF1_like; RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

      Range
      159514053..159528281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000089.1 Alternate Rn_Celera

      Range
      142977478..142991659
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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