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    Bcas2 BCAS2, pre-mRNA processing factor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 295334, updated on 18-Apr-2019

    Summary

    Official Symbol
    Bcas2provided by RGD
    Official Full Name
    BCAS2, pre-mRNA processing factorprovided by RGD
    Primary source
    RGD:1306485
    See related
    Ensembl:ENSRNOG00000018783
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Spleen (RPKM 589.2), Heart (RPKM 274.8) and 9 other tissues See more
    Orthologs

    Genomic context

    See Bcas2 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (205662633..205670514)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (225092498..225100379)

    Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene adenosine monophosphate deaminase 1 Neighboring gene DENN domain containing 2C Neighboring gene similar to Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Golli-interacting protein) (GIP) Neighboring gene carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    DNA replication factor A complex IEA
    Inferred from Electronic Annotation
    more info
     
    colocalizes_with DNA replication factor A complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Prp19 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    U2-type catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    centrosome IEA
    Inferred from Electronic Annotation
    more info
     
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear speck IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    pre-mRNA-splicing factor SPF27
    Names
    breast carcinoma amplified sequence 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106458.2NP_001099928.1  pre-mRNA-splicing factor SPF27

      See identical proteins and their annotated locations for NP_001099928.1

      Status: PROVISIONAL

      Source sequence(s)
      BC169122
      UniProtKB/TrEMBL
      B5DFM8
      Related
      ENSRNOP00000025592.4, ENSRNOT00000025592.6
      Conserved Domains (1) summary
      pfam05700
      Location:12214
      BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

      Range
      205662633..205670514
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000070.1 Alternate Rn_Celera

      Range
      183165971..183173852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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