Format

Send to:

Choose Destination
    • Showing Current items.

    PHACTR2-AS1 PHACTR2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 285740, updated on 15-Jun-2019

    Summary

    Official Symbol
    PHACTR2-AS1provided by HGNC
    Official Full Name
    PHACTR2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40943
    See related
    Ensembl:ENSG00000235740
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.9) See more

    Genomic context

    See PHACTR2-AS1 in Genome Data Viewer
    Location:
    6q24.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (143554115..143569339, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (143875467..143890476, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378035 Neighboring gene alpha-L-fucosidase 2 Neighboring gene phosphatase and actin regulator 2 Neighboring gene LTV1 ribosome biogenesis factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Genome-wide association analyses identify variants in developmental genes associated with hypospadias.
    NHGRI GWA Catalog

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027113.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 5' exon, compared to variant 1.
      Source sequence(s)
      AK093151, AK098520, HY183893, HY207533
    2. NR_027114.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AL357117
    3. NR_110148.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains multiple alternate exons, compared to variant 1.
      Source sequence(s)
      AL357117
      Related
      ENST00000450575.1
    4. NR_110149.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) contains an alternate 5' exon, compared to variant 1.
      Source sequence(s)
      AK093151, AL357117, BC033369, HY000603, HY183893

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

      Range
      143554115..143569339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center