Format

Send to:

Choose Destination
    • Showing Current items.

    C5orf64 chromosome 5 open reading frame 64 [ Homo sapiens (human) ]

    Gene ID: 285668, updated on 8-Jul-2019

    Summary

    Official Symbol
    C5orf64provided by HGNC
    Official Full Name
    chromosome 5 open reading frame 64provided by HGNC
    Primary source
    HGNC:HGNC:26744
    See related
    Ensembl:ENSG00000178722
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Annotation information
    Note: This locus is considered non-coding by other groups due to a lack of experimental support for the protein, but NCBI annotates the protein because it meets minimal RefSeq quality criteria for representation. The coding status remains uncertain. [19 Nov 2014]
    Expression
    Low expression observed in reference dataset See more
    Orthologs

    Genomic context

    See C5orf64 in Genome Data Viewer
    Location:
    5q12.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (61637760..61730997)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (60933636..61002362)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene zinc finger SWIM-type containing 6 Neighboring gene ribosomal protein L3 pseudogene 6 Neighboring gene basic proline-rich protein Neighboring gene uncharacterized LOC101928651 Neighboring gene RNA, U6 small nuclear 913, pseudogene Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 22 Neighboring gene C5orf64 antisense RNA 1 Neighboring gene uncharacterized LOC105378995

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Other Names

    • uncharacterized protein C5orf64

    Clone Names

    • FLJ37543, FLJ45901, MGC138187, MGC138213

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126523.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AC094086, AK094862, DA152848, DB166929
    2. NR_126524.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate internal exon and contains alternate 3' exon structure, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      DA364196, DA388090, DB309601, DB463100
    3. NR_126525.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) shares the 5' terminal exon but lacks the remaining exons, and instead contains an alternate 3' terminal exon, compared to variant 1. This variant is represented as non-coding because it lacks the entire ORF found in variant 1.
      Source sequence(s)
      DA364196, DA388090, DB309601
    4. NR_161251.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026746, AC094086
      Related
      ENST00000505642.6

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

      Range
      61637760..61730997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center