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    TPRG1 tumor protein p63 regulated 1 [ Homo sapiens (human) ]

    Gene ID: 285386, updated on 17-Jun-2019

    Summary

    Official Symbol
    TPRG1provided by HGNC
    Official Full Name
    tumor protein p63 regulated 1provided by HGNC
    Primary source
    HGNC:HGNC:24759
    See related
    Ensembl:ENSG00000188001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM79B
    Expression
    Biased expression in esophagus (RPKM 2.6), skin (RPKM 1.9) and 7 other tissues See more
    Orthologs

    Genomic context

    See TPRG1 in Genome Data Viewer
    Location:
    3q28
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (189000779..189325304)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (188817910..189041271)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986168 Neighboring gene TPRG1 antisense RNA 1 Neighboring gene uncharacterized LOC107986167 Neighboring gene enolase-phosphatase 1 pseudogene Neighboring gene TPRG1 antisense RNA 2 Neighboring gene uncharacterized LOC105374270 Neighboring gene uncharacterized LOC107986169

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.
    NHGRI GWA Catalog

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ41238, FLJ43694, MGC126599, MGC126601

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    tumor protein p63-regulated gene 1 protein
    Names
    family with sequence similarity 79, member B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198485.4NP_940887.1  tumor protein p63-regulated gene 1 protein

      See identical proteins and their annotated locations for NP_940887.1

      Status: VALIDATED

      Source sequence(s)
      AC104669, AC112909, AK125682, BC101550, CR737485
      Consensus CDS
      CCDS3292.1
      UniProtKB/Swiss-Prot
      Q6ZUI0
      Related
      ENSP00000341031.3, ENST00000345063.8
      Conserved Domains (1) summary
      pfam12456
      Location:70170
      hSac2; Inositol phosphatase

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

      Range
      189000779..189325304
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017006261.2XP_016861750.1  tumor protein p63-regulated gene 1 protein isoform X3

      UniProtKB/Swiss-Prot
      Q6ZUI0
      Related
      ENSP00000412547.1, ENST00000433971.5
      Conserved Domains (1) summary
      pfam12456
      Location:70170
      hSac2; Inositol phosphatase
    2. XM_024453479.1XP_024309247.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    3. XM_024453478.1XP_024309246.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    4. XM_017006257.1XP_016861746.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    5. XM_024453473.1XP_024309241.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    6. XM_024453477.1XP_024309245.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    7. XM_024453475.1XP_024309243.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    8. XM_024453480.1XP_024309248.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    9. XM_024453474.1XP_024309242.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    10. XM_024453476.1XP_024309244.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    11. XM_024453481.1XP_024309249.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    12. XM_024453482.1XP_024309250.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    13. XM_017006258.1XP_016861747.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    14. XM_024453483.1XP_024309251.1  tumor protein p63-regulated gene 1 protein isoform X3

      Conserved Domains (1) summary
      pfam12456
      Location:70170
      hSac2; Inositol phosphatase
    15. XM_017006260.1XP_016861749.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    16. XM_017006259.1XP_016861748.1  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    17. XM_011512732.2XP_011511034.2  tumor protein p63-regulated gene 1 protein isoform X1

      Conserved Domains (1) summary
      pfam12456
      Location:70190
      hSac2; Inositol phosphatase
    18. XM_005247382.5XP_005247439.1  tumor protein p63-regulated gene 1 protein isoform X2

      Conserved Domains (1) summary
      pfam12456
      Location:78178
      hSac2; Inositol phosphatase
    19. XM_011512735.3XP_011511037.1  tumor protein p63-regulated gene 1 protein isoform X5

      Conserved Domains (1) summary
      pfam12456
      Location:78108
      hSac2; Inositol phosphatase
    20. XM_011512734.3XP_011511036.1  tumor protein p63-regulated gene 1 protein isoform X4

      Conserved Domains (1) summary
      pfam12456
      Location:78178
      hSac2; Inositol phosphatase
    21. XM_005247388.4XP_005247445.1  tumor protein p63-regulated gene 1 protein isoform X8

      Conserved Domains (1) summary
      pfam12456
      Location:78109
      hSac2; Inositol phosphatase
    22. XM_011512736.3XP_011511038.1  tumor protein p63-regulated gene 1 protein isoform X7

      Conserved Domains (1) summary
      pfam12456
      Location:78109
      hSac2; Inositol phosphatase
    23. XM_017006262.1XP_016861751.1  tumor protein p63-regulated gene 1 protein isoform X6

    24. XM_017006263.1XP_016861752.1  tumor protein p63-regulated gene 1 protein isoform X6

    RNA

    1. XR_001740120.2 RNA Sequence

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