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    RTP5 receptor transporter protein 5 (putative) [ Homo sapiens (human) ]

    Gene ID: 285093, updated on 5-Mar-2024

    Summary

    Official Symbol
    RTP5provided by HGNC
    Official Full Name
    receptor transporter protein 5 (putative)provided by HGNC
    Primary source
    HGNC:HGNC:26585
    See related
    Ensembl:ENSG00000188011 AllianceGenome:HGNC:26585
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CXXC11; C2orf85; Z3CXXC5
    Summary
    Predicted to enable olfactory receptor binding activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of bitter taste; protein insertion into membrane; and protein targeting to membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in brain (RPKM 2.7), lymph node (RPKM 0.5) and 3 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    2q37.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (241869729..241873823)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (242371330..242375424)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (242811881..242815975)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373977 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242800252-242801214 Neighboring gene uncharacterized LOC124908032 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242807941-242808722 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242813965-242814521 Neighboring gene programmed cell death 1 Neighboring gene uncharacterized LOC105373978 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242822944-242823534 Neighboring gene long intergenic non-protein coding RNA 1237 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242842086-242842730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242842731-242843374 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242843375-242844020 Neighboring gene family with sequence similarity 240 member C

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Clone Names

    • FLJ33590, MGC142077, MGC142079

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables olfactory receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in detection of chemical stimulus involved in sensory perception of bitter taste IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein insertion into membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein targeting to membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    receptor-transporting protein 5
    Names
    3CxxC-type zinc finger protein 5
    CXXC finger protein 11
    CXXC-type zinc finger protein 11
    receptor (chemosensory) transporter protein 5 (putative)
    zinc finger, 3CxxC-type 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173821.3NP_776182.2  receptor-transporting protein 5

      See identical proteins and their annotated locations for NP_776182.2

      Status: VALIDATED

      Source sequence(s)
      AC131097, BC113517
      Consensus CDS
      CCDS42843.1
      UniProtKB/Swiss-Prot
      Q14D33, Q8N2A5
      Related
      ENSP00000345374.3, ENST00000343216.3
      Conserved Domains (1) summary
      pfam13695
      Location:53150
      zf-3CxxC; Zinc-binding domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      241869729..241873823
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187527.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      81827..85921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      242371330..242375424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)