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    PXDC1 PX domain containing 1 [ Homo sapiens (human) ]

    Gene ID: 221749, updated on 17-Jun-2019

    Summary

    Official Symbol
    PXDC1provided by HGNC
    Official Full Name
    PX domain containing 1provided by HGNC
    Primary source
    HGNC:HGNC:21361
    See related
    Ensembl:ENSG00000168994
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C6orf145
    Expression
    Ubiquitous expression in liver (RPKM 40.1), placenta (RPKM 24.5) and 24 other tissues See more
    Orthologs

    Genomic context

    See PXDC1 in Genome Data Viewer
    Location:
    6p25.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (3722602..3752297, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (3722836..3752246, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 3383 Neighboring gene uncharacterized LOC100507336 Neighboring gene translocase of outer mitochondrial membrane 5 homolog (yeast) pseudogene Neighboring gene uncharacterized LOC107986557 Neighboring gene family with sequence similarity 50 member B Neighboring gene uncharacterized LOC105374893

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    PX domain-containing protein 1
    Names
    PX domain-containing protein C6orf145

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183373.3NP_899229.2  PX domain-containing protein 1

      See identical proteins and their annotated locations for NP_899229.2

      Status: VALIDATED

      Source sequence(s)
      AK024828, AK289598, BC056908, BG703675, CK725197, DA164068, DB481678
      Consensus CDS
      CCDS4486.1
      UniProtKB/Swiss-Prot
      Q5TGL8
      Related
      ENSP00000369636.4, ENST00000380283.4
      Conserved Domains (1) summary
      cl02563
      Location:46127
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

      Range
      3722602..3752297 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011514393.3XP_011512695.1  PX domain-containing protein 1 isoform X1

      Related
      ENSP00000369630.2, ENST00000380277.6
      Conserved Domains (1) summary
      cl02563
      Location:3567
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    RNA

    1. XR_001743252.2 RNA Sequence

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