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    SPATA24 spermatogenesis associated 24 [ Homo sapiens (human) ]

    Gene ID: 202051, updated on 17-Jun-2019

    Summary

    Official Symbol
    SPATA24provided by HGNC
    Official Full Name
    spermatogenesis associated 24provided by HGNC
    Primary source
    HGNC:HGNC:27322
    See related
    Ensembl:ENSG00000170469
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    T6441; CCDC161
    Expression
    Broad expression in testis (RPKM 10.5), prostate (RPKM 2.2) and 14 other tissues See more
    Orthologs

    Genomic context

    See SPATA24 in Genome Data Viewer
    Location:
    5q31.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (139395269..139404204, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (138731514..138739820, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene marginal zone B and B1 cell specific protein Neighboring gene proline rich basic protein 1 Neighboring gene DnaJ heat shock protein family (Hsp40) member C18 Neighboring gene RNA, U5B small nuclear 4, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosol IDA
    Inferred from Direct Assay
    more info
     
    nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
     

    General protein information

    Preferred Names
    spermatogenesis-associated protein 24
    Names
    coiled-coil domain containing 161
    testis protein T6441 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_194296.1NP_919272.1  spermatogenesis-associated protein 24

      See identical proteins and their annotated locations for NP_919272.1

      Status: VALIDATED

      Source sequence(s)
      AA399058, BC040037, BM785501
      Consensus CDS
      CCDS47274.1
      UniProtKB/Swiss-Prot
      Q86W54
      Related
      ENSP00000414920.2, ENST00000450845.6
      Conserved Domains (1) summary
      pfam15175
      Location:25191
      SPATA24; Spermatogenesis-associated protein 24

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

      Range
      139395269..139404204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005271916.4XP_005271973.1  spermatogenesis-associated protein 24 isoform X1

      Conserved Domains (3) summary
      pfam13863
      Location:50161
      DUF4200; Domain of unknown function (DUF4200)
      pfam15175
      Location:25162
      SPATA24; Spermatogenesis-associated protein 24
      pfam16006
      Location:130220
      NUSAP; Nucleolar and spindle-associated protein
    2. XM_011543252.2XP_011541554.1  spermatogenesis-associated protein 24 isoform X2

      See identical proteins and their annotated locations for XP_011541554.1

      Conserved Domains (3) summary
      pfam13863
      Location:11122
      DUF4200; Domain of unknown function (DUF4200)
      pfam15175
      Location:1123
      SPATA24; Spermatogenesis-associated protein 24
      pfam16006
      Location:91181
      NUSAP; Nucleolar and spindle-associated protein
    3. XM_011543253.2XP_011541555.1  spermatogenesis-associated protein 24 isoform X2

      See identical proteins and their annotated locations for XP_011541555.1

      Conserved Domains (3) summary
      pfam13863
      Location:11122
      DUF4200; Domain of unknown function (DUF4200)
      pfam15175
      Location:1123
      SPATA24; Spermatogenesis-associated protein 24
      pfam16006
      Location:91181
      NUSAP; Nucleolar and spindle-associated protein
    4. XM_011543254.2XP_011541556.1  spermatogenesis-associated protein 24 isoform X3

      Conserved Domains (1) summary
      pfam15175
      Location:25134
      SPATA24; Spermatogenesis-associated protein 24
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