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    TVP23C trans-golgi network vesicle protein 23 homolog C [ Homo sapiens (human) ]

    Gene ID: 201158, updated on 12-May-2019

    Summary

    Official Symbol
    TVP23Cprovided by HGNC
    Official Full Name
    trans-golgi network vesicle protein 23 homolog Cprovided by HGNC
    Primary source
    HGNC:HGNC:30453
    See related
    Ensembl:ENSG00000175106
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM18B2
    Expression
    Ubiquitous expression in thyroid (RPKM 7.5), adrenal (RPKM 5.9) and 25 other tissues See more
    Orthologs

    Genomic context

    See TVP23C in Genome Data Viewer
    Location:
    17p12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 17 NC_000017.11 (15502264..15563631, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (15405578..15466945, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene TVP23C-CDRT4 readthrough Neighboring gene CMT1A duplicated region transcript 4 Neighboring gene ribosomal protein L9 pseudogene 2 Neighboring gene CMT1A duplicated region transcript 3 Neighboring gene peptidylprolyl isomerase A pseudogene 53 Neighboring gene proximal CMT1A-REP Neighboring gene CMT1A duplicated region transcript 1 Neighboring gene tripartite motif containing 16 Neighboring gene zinc finger protein 29, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC8763

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    protein secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    Golgi apparatus membrane protein TVP23 homolog C
    Names
    family with sequence similarity 18, member B2
    protein FAM18B2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135036.1NP_001128508.1  Golgi apparatus membrane protein TVP23 homolog C isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate terminal exon and thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a distinct and shorter C-terminus, compared to isoform 1.
      Source sequence(s)
      AC005838, AK310363, BU754306, DC393880
      Consensus CDS
      CCDS45617.1
      UniProtKB/Swiss-Prot
      Q96ET8
      Related
      ENSP00000464052.1, ENST00000518321.5
      Conserved Domains (1) summary
      pfam05832
      Location:32174
      DUF846; Eukaryotic protein of unknown function (DUF846)
    2. NM_145301.2NP_660344.2  Golgi apparatus membrane protein TVP23 homolog C isoform 1

      See identical proteins and their annotated locations for NP_660344.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (1).
      Source sequence(s)
      AC005517, AC005838, BC011952, BQ448398, DC393880
      Consensus CDS
      CCDS11170.1
      UniProtKB/Swiss-Prot
      Q96ET8
      Related
      ENSP00000225576.3, ENST00000225576.7
      Conserved Domains (1) summary
      pfam05832
      Location:32154
      DUF846; Eukaryotic protein of unknown function (DUF846)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p12 Primary Assembly

      Range
      15502264..15563631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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