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    DEFT1P defensin theta 1, pseudogene [ Homo sapiens (human) ]

    Gene ID: 170949, updated on 17-Jun-2019

    Summary

    Official Symbol
    DEFT1Pprovided by HGNC
    Official Full Name
    defensin theta 1, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:18339
    See related
    Ensembl:ENSG00000215378
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DEFQ1; DEFT1
    Expression
    Restricted expression toward bone marrow (RPKM 1.1) See more

    Genomic context

    See DEFT1P in Genome Data Viewer
    Location:
    8p23.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (6987178..6989721, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (6844700..6847243, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene defensin alpha 10, pseudogene Neighboring gene defensin alpha 1 Neighboring gene defensin alpha 1B Neighboring gene defensin theta 1, pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Other Names

    • circular minidefensin
    • defensin-related pseudogene
    • demidefensin
    • pro-retrocyclin
    • retrocyclin pseudogene

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_036686.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF233439, AF355799
      Related
      ENST00000453425.1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

      Range
      6987178..6989721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p13 PATCHES

    Genomic

    1. NW_018654717.1 Reference GRCh38.p13 PATCHES

      Range
      382297..384838 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_005042.2: Suppressed sequence

      Description
      NG_005042.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
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