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    SLC35F3 solute carrier family 35 member F3 [ Homo sapiens (human) ]

    Gene ID: 148641, updated on 17-Jun-2019

    Summary

    Official Symbol
    SLC35F3provided by HGNC
    Official Full Name
    solute carrier family 35 member F3provided by HGNC
    Primary source
    HGNC:HGNC:23616
    See related
    Ensembl:ENSG00000183780
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 3.2), adrenal (RPKM 0.5) and 8 other tissues See more
    Orthologs

    Genomic context

    See SLC35F3 in Genome Data Viewer
    Location:
    1q42.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (233904676..234324518)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (234040679..234460262)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene microRNA 4427 Neighboring gene potassium two pore domain channel subfamily K member 1 Neighboring gene uncharacterized LOC107985362 Neighboring gene uncharacterized LOC107985363 Neighboring gene Rac family small GTPase 1 pseudogene 7 Neighboring gene uncharacterized LOC102724100 Neighboring gene uncharacterized LOC105373206 Neighboring gene ribosomal protein L9 pseudogene 10 Neighboring gene microRNA 4671 Neighboring gene ribosomal protein S15 pseudogene 2 Neighboring gene COA6 antisense RNA 1 Neighboring gene cytochrome c oxidase assembly factor 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ37712

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    thiamine transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    thiamine transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    putative thiamine transporter SLC35F3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001300845.1NP_001287774.1  putative thiamine transporter SLC35F3 isoform 2

      See identical proteins and their annotated locations for NP_001287774.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
      Source sequence(s)
      AK095031, BC037878, DB468252, HY303761
      Consensus CDS
      CCDS73050.1
      UniProtKB/Swiss-Prot
      Q8IY50
      Related
      ENSP00000355576.3, ENST00000366617.3
      Conserved Domains (2) summary
      pfam00892
      Location:67223
      EamA; EamA-like transporter family
      pfam06027
      Location:165338
      SLC35F; Solute carrier family 35
    2. NM_173508.4NP_775779.1  putative thiamine transporter SLC35F3 isoform 1

      See identical proteins and their annotated locations for NP_775779.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK095031, AL713868
      Consensus CDS
      CCDS1600.1
      UniProtKB/Swiss-Prot
      Q8IY50
      Related
      ENSP00000355577.3, ENST00000366618.8
      Conserved Domains (2) summary
      pfam00892
      Location:136292
      EamA; EamA-like transporter family
      pfam06027
      Location:234407
      SLC35F; Solute carrier family 35

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      233904676..234324518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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