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    Atp6v0b ATPase, H+ transporting, lysosomal V0 subunit B [ Mus musculus (house mouse) ]

    Gene ID: 114143, updated on 2-Jun-2019

    Summary

    Official Symbol
    Atp6v0bprovided by MGI
    Official Full Name
    ATPase, H+ transporting, lysosomal V0 subunit Bprovided by MGI
    Primary source
    MGI:MGI:1890510
    See related
    Ensembl:ENSMUSG00000033379
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Atp6f; VMA16; 2310024H13Rik
    Expression
    Ubiquitous expression in kidney adult (RPKM 210.8), adrenal adult (RPKM 164.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Atp6v0b in Genome Data Viewer
    Location:
    4; 4 D2.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (117884330..117887329, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (117556935..117559934, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 (neurotransmitter transporter, glycine), member 9 Neighboring gene coiled-coil domain containing 24 Neighboring gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 Neighboring gene predicted gene, 40233 Neighboring gene predicted gene 12841 Neighboring gene DPH2 homolog Neighboring gene importin 13

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    proton-exporting ATPase activity, phosphorylative mechanism ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    proton-transporting ATPase activity, rotational mechanism IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    proton transmembrane transport ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    Component Evidence Code Pubs
    endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
     
    proton-transporting two-sector ATPase complex, proton-transporting domain IEA
    Inferred from Electronic Annotation
    more info
     
    vacuolar proton-transporting V-type ATPase complex ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    vacuole IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    V-type proton ATPase 21 kDa proteolipid subunit
    Names
    23 kDa subunit of V-ATPase
    ATPase, H+ transporting, V0 subunit B
    ATPase, H+ transporting, lysosomal (vacuolar proton pump)
    ATPase, H+ transporting, lysosomal 21kDa, V0 subunit B
    V-ATPase 21 kDa proteolipid subunit
    lysosomal 21kDa
    vacuolar proton pump 21 kDa proteolipid subunit
    NP_291095.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_033617.3NP_291095.1  V-type proton ATPase 21 kDa proteolipid subunit

      See identical proteins and their annotated locations for NP_291095.1

      Status: PROVISIONAL

      Source sequence(s)
      AL627128
      Consensus CDS
      CCDS18540.1
      UniProtKB/Swiss-Prot
      Q91V37
      UniProtKB/TrEMBL
      Q3U889
      Related
      ENSMUSP00000047682.7, ENSMUST00000036380.13
      Conserved Domains (1) summary
      pfam00137
      Location:138196
      ATP-synt_C; ATP synthase subunit C

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      117884330..117887329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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