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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_034141.1 RefSeqGene
- Range
-
5300..7691
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001293197.2 → NP_001280126.1 E3 ubiquitin-protein ligase CHIP isoform b
See identical proteins and their annotated locations for NP_001280126.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 5' region and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) has a shorter N-terminus than isoform a.
- Source sequence(s)
-
AF217968, BC017178, Z92544
- Consensus CDS
-
CCDS76797.1
- UniProtKB/Swiss-Prot
-
Q9UNE7
- Related
- ENSP00000457228.1, ENST00000565677.5
- Conserved Domains (3) summary
-
- sd00006
Location:21 → 51
- TPR; TPR repeat [structural motif]
- cd16654
Location:155 → 221
- RING-Ubox_CHIP; U-box domain, a modified RING finger, found in carboxyl terminus of HSP70-interacting protein (CHIP) and similar proteins
- pfam12895
Location:1 → 48
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
-
NM_005861.4 → NP_005852.2 E3 ubiquitin-protein ligase CHIP isoform a
See identical proteins and their annotated locations for NP_005852.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (a).
- Source sequence(s)
-
AF217968, BC017178, Z92544
- Consensus CDS
-
CCDS10419.1
- UniProtKB/Swiss-Prot
- Q9HBT1, Q9UNE7
- Related
- ENSP00000219548.4, ENST00000219548.9
- Conserved Domains (4) summary
-
- PLN03088
Location:26 → 126
- PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
- sd00006
Location:26 → 54
- TPR; TPR repeat [structural motif]
- cd16654
Location:227 → 293
- RING-Ubox_CHIP; U-box domain, a modified RING finger, found in carboxyl terminus of HSP70-interacting protein (CHIP) and similar proteins
- pfam18391
Location:142 → 225
- CHIP_TPR_N; CHIP N-terminal tetratricopeptide repeat domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
680410..682801
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
684485..686876
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)