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    BHLHE40-AS1 BHLHE40 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100507582, updated on 13-Feb-2019

    Summary

    Official Symbol
    BHLHE40-AS1provided by HGNC
    Official Full Name
    BHLHE40 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:44471
    See related
    Ensembl:ENSG00000235831
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in kidney (RPKM 3.4), adrenal (RPKM 3.3) and 25 other tissues See more

    Genomic context

    See BHLHE40-AS1 in Genome Data Viewer
    Location:
    3p26.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 3 NC_000003.12 (4896809..4979961, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (4938493..5021646, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene uncharacterized LOC105376933 Neighboring gene eosinophil granule ontogeny transcript Neighboring gene uncharacterized LOC105376934 Neighboring gene basic helix-loop-helix family member e40 Neighboring gene ring finger protein 10 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037903.3 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC018816, AK056892, AK311646, KF573690
    2. NR_125914.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 5' terminal exon, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AC018816, AK311159
    3. NR_125915.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate internal exon and uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AC018816, AK056892
      Related
      ENST00000620618.4
    4. NR_125916.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AC018816, AK056892, DA948054, KF573690
      Related
      ENST00000615178.4

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p12 Primary Assembly

      Range
      4896809..4979961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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