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    LINC02539 long intergenic non-protein coding RNA 2539 [ Homo sapiens (human) ]

    Gene ID: 100507406, updated on 17-Jun-2019

    Summary

    Official Symbol
    LINC02539provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2539provided by HGNC
    Primary source
    HGNC:HGNC:53572
    See related
    Ensembl:ENSG00000234956
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.3) See more

    Genomic context

    See LINC02539 in Genome Data Viewer
    Location:
    6q23.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (137730170..137739037, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (138051307..138060120, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723649 Neighboring gene uncharacterized LOC105378018 Neighboring gene protein tyrosine phosphatase non-receptor type 11 pseudogene Neighboring gene wound and keratinocyte migration associated lncRNA 2 Neighboring gene uncharacterized LOC107986649 Neighboring gene TNF alpha induced protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121618.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL357060, BQ011120, N41668
      Related
      ENST00000411615.5
    2. NR_121619.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL357060, BF970945, BQ011120
      Related
      ENST00000419220.1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

      Range
      137730170..137739037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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