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    LOC100506990 uncharacterized LOC100506990 [ Homo sapiens (human) ]

    Gene ID: 100506990, updated on 17-Jun-2019

    Summary

    Gene symbol
    LOC100506990
    Gene description
    uncharacterized LOC100506990
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in ovary (RPKM 4.6), thyroid (RPKM 4.3) and 25 other tissues See more

    Genomic context

    See LOC100506990 in Genome Data Viewer
    Location:
    8p23.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (12437013..12566845)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (12294522..12424354)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 90 member A25, pseudogene Neighboring gene ALG1 like 12, pseudogene Neighboring gene Sharpr-MPRA regulatory regions 5244/11724 and 13137 Neighboring gene family with sequence similarity 86 member B2 Neighboring gene defensin beta 109E (pseudogene) Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 6 Neighboring gene uncharacterized LOC729732 Neighboring gene ribosomal protein S3a pseudogene 34 Neighboring gene ribosomal protein S3a pseudogene 35

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040091.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC087203, AC130352, AL539380, BC037934
    2. NR_040092.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two exons, includes an alternate exon and uses an alternate splice site, compared to variant 1.
      Source sequence(s)
      AC068587, AC087203, AK095981, AL539380

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

      Range
      12437013..12566845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p13 PATCHES

    Genomic

    1. NW_018654717.1 Reference GRCh38.p13 PATCHES

      Range
      5632278..5762234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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