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    LINC01539 long intergenic non-protein coding RNA 1539 [ Homo sapiens (human) ]

    Gene ID: 100505474, updated on 17-Jun-2019

    Summary

    Official Symbol
    LINC01539provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1539provided by HGNC
    Primary source
    HGNC:HGNC:51307
    See related
    Ensembl:ENSG00000267712
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 8.1) See more

    Genomic context

    See LINC01539 in Genome Data Viewer
    Location:
    18q21.2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (56083356..56137536, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (53750587..53804767, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1416 Neighboring gene uncharacterized LOC107985164 Neighboring gene uncharacterized LOC642484 Neighboring gene long intergenic non-protein coding RNA 1905 Neighboring gene uncharacterized LOC105372132 Neighboring gene uncharacterized LOC105372135

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040025.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK057336, AK058169
      Related
      ENST00000587904.5
    2. NR_040026.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two exons, includes two alternate exons, and uses an alternate splice site, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC006305, AK057336
      Related
      ENST00000591974.5

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

      Range
      56083356..56137536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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