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    LINC00887 long intergenic non-protein coding RNA 887 [ Homo sapiens (human) ]

    Gene ID: 100131551, updated on 15-Jun-2019

    Summary

    Official Symbol
    LINC00887provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 887provided by HGNC
    Primary source
    HGNC:HGNC:48574
    See related
    Ensembl:ENSG00000214145
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HEIRCC
    Expression
    Biased expression in adrenal (RPKM 3.6), esophagus (RPKM 0.3) and 1 other tissue See more

    Genomic context

    See LINC00887 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 3 NC_000003.12 (194301199..194312804, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (194018988..194030593, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2036 Neighboring gene long intergenic non-protein coding RNA 2037 Neighboring gene long intergenic non-protein coding RNA 2048 Neighboring gene carboxypeptidase N subunit 2 Neighboring gene leucine rich repeat containing 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Other Names

    • high-expressed in renal cell carcinoma
    • linc-ATP13A4-8

    Clone Names

    • FLJ30066

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024480.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117469, AI733313, BC113537
      Related
      ENST00000414120.1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

      Range
      194301199..194312804 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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