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    LOC100131315 uncharacterized LOC100131315 [ Homo sapiens (human) ]

    Gene ID: 100131315, updated on 29-Mar-2018

    Summary

    Gene symbol
    LOC100131315
    Gene description
    uncharacterized LOC100131315
    See related
    Ensembl:ENSG00000259721
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in colon (RPKM 2.3), gall bladder (RPKM 0.5) and 6 other tissues See more

    Genomic context

    See LOC100131315 in Genome Data Viewer
    Location:
    15q13.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 15 NC_000015.10 (32718101..32718865, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370757 Neighboring gene uncharacterized LOC105370756 Neighboring gene secretogranin V Neighboring gene gremlin 1, DAN family BMP antagonist Neighboring gene uncharacterized LOC107984089 Neighboring gene formin 1 Neighboring gene microtubule-associated proteins 1A/1B light chain 3 beta 2-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.
    NHGRI GWA Catalog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109767.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090877
      Related
      ENST00000560363.1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p12 Primary Assembly

      Range
      32718101..32718865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p12 PATCHES

    Genomic

    1. NW_011332701.1 Reference GRCh38.p12 PATCHES

      Range
      4770243..4771007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p12 PATCHES

    Genomic

    1. NW_012132920.1 Reference GRCh38.p12 PATCHES

      Range
      2236515..2237279 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p12 ALT_REF_LOCI_2

    Genomic

    1. NT_187660.1 Reference GRCh38.p12 ALT_REF_LOCI_2

      Range
      4932695..4933459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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