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    light TNF superfamily member 14 [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 100136319, updated on 14-Dec-2023

    Summary

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    Gene symbol
    light
    Gene description
    TNF superfamily member 14
    See related
    Ensembl:ENSOMYG00000017259
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (83643145..83650422)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (80718190..80721244)

    Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene queuine tRNA-ribosyltransferase catalytic subunit 1 Neighboring gene dynamin-2 Neighboring gene transmembrane p24 trafficking protein 1a Neighboring gene TNF superfamily member 18 Neighboring gene phosphatidic acid phosphatase type 2D Neighboring gene uncharacterized LOC118937755 Neighboring gene uncharacterized LOC110539179

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNF superfamily member 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001124567.2 → NP_001118039.1  TNF superfamily member 14

      See identical proteins and their annotated locations for NP_001118039.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ218470
      UniProtKB/TrEMBL
      A0A8C7QI46, Q2I7F4
      Related
      ENSOMYP00000037100.2, ENSOMYT00000040496.2
      Conserved Domains (1) summary
      cd00184
      Location:102 → 236
      TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      83643145..83650422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_005034827.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases