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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001080549.2 → NP_001074018.1 highly divergent homeobox isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AK083436, BC116300, CJ060144
- Consensus CDS
-
CCDS41105.1
- UniProtKB/Swiss-Prot
- Q14B69, Q14B70
- Related
- ENSMUSP00000109049.3, ENSMUST00000113422.9
- Conserved Domains (2) summary
-
- smart00389
Location:4 → 59
- HOX; Homeodomain
- cd00086
Location:441 → 497
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
-
NM_001290459.1 → NP_001277388.1 highly divergent homeobox isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks a portion of the 5' coding region and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AK083436, BC116300, CJ060144
- Consensus CDS
-
CCDS72422.1
- UniProtKB/Swiss-Prot
-
Q14B70
- Related
- ENSMUSP00000043482.6, ENSMUST00000038472.7
- Conserved Domains (1) summary
-
- cd00086
Location:383 → 439
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000086.8 Reference GRCm39 C57BL/6J
- Range
-
110484901..110606908 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036161960.1 → XP_036017853.1 highly divergent homeobox isoform X1
- Conserved Domains (2) summary
-
- smart00389
Location:4 → 59
- HOX; Homeodomain
- cd00086
Location:441 → 497
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.