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    Foxj2 forkhead box J2 [ Mus musculus (house mouse) ]

    Gene ID: 60611, updated on 18-Sep-2024

    Summary

    Official Symbol
    Foxj2provided by MGI
    Official Full Name
    forkhead box J2provided by MGI
    Primary source
    MGI:MGI:1926805
    See related
    Ensembl:ENSMUSG00000003154 AllianceGenome:MGI:1926805
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fhx
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Involved in male meiosis I and spermatogenesis. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human FOXJ2 (forkhead box J2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in lung adult (RPKM 7.9), spleen adult (RPKM 7.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Foxj2 in Genome Data Viewer
    Location:
    6 F2; 6 57.91 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (122797143..122822325)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (122820184..122845366)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 (facilitated glucose transporter), member 3 Neighboring gene STARR-positive B cell enhancer ABC_E3679 Neighboring gene uridine-cytidine kinase 1 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E283 Neighboring gene predicted gene 5112 Neighboring gene microRNA 7231 Neighboring gene STARR-seq mESC enhancer starr_17260 Neighboring gene complement component 3a receptor 1 Neighboring gene STARR-positive B cell enhancer ABC_E2206 Neighboring gene STARR-positive B cell enhancer ABC_E687 Neighboring gene NECAP endocytosis associated 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in fibrillar center IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    forkhead box protein J2
    Names
    fork head homologous X

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021899.3NP_068699.1  forkhead box protein J2

      See identical proteins and their annotated locations for NP_068699.1

      Status: VALIDATED

      Source sequence(s)
      AC163108
      Consensus CDS
      CCDS20503.1
      UniProtKB/Swiss-Prot
      Q9ES18
      Related
      ENSMUSP00000003238.8, ENSMUST00000003238.14
      Conserved Domains (1) summary
      pfam00250
      Location:66143
      Forkhead; Forkhead domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      122797143..122822325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)