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    tfdp1a transcription factor Dp-1, a [ Danio rerio (zebrafish) ]

    Gene ID: 406813, updated on 9-Apr-2018
    Official Symbol
    tfdp1aprovided by ZNC
    Official Full Name
    transcription factor Dp-1, aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2883
    See related
    Ensembl:ENSDARG00000019293 Vega:OTTDARG00000025889
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    tfdp1l; zgc:55487; wu:fb94b07; wu:fc52a06
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (34950941..34968650)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (35141756..35159463)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene cell division cycle 16 homolog (S. cerevisiae) Neighboring gene DCN1, defective in cullin neddylation 1, domain containing 2a Neighboring gene zgc:172067 Neighboring gene si:ch211-160b11.4

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor complex IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    RNA-binding protein MEX3A
    Names
    transcription factor Dp-1, like

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213492.2NP_998657.1  RNA-binding protein MEX3A

      See identical proteins and their annotated locations for NP_998657.1

      Status: VALIDATED

      Source sequence(s)
      CR936415
      UniProtKB/TrEMBL
      Q803N1
      Related
      ENSDARP00000072266.4, OTTDARP00000027619, ENSDART00000077800.6, OTTDART00000034234
      Conserved Domains (3) summary
      cd14458
      Location:198244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:115193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200339
      DP; Transcription factor DP

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      34950941..34968650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304816.2XP_009303091.1  RNA-binding protein MEX3A isoform X1

      See identical proteins and their annotated locations for XP_009303091.1

      UniProtKB/TrEMBL
      Q803N1
      Conserved Domains (3) summary
      cd14458
      Location:198244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:115193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200339
      DP; Transcription factor DP
    2. XM_005167824.4XP_005167881.1  RNA-binding protein MEX3A isoform X1

      See identical proteins and their annotated locations for XP_005167881.1

      UniProtKB/TrEMBL
      Q803N1
      Conserved Domains (3) summary
      cd14458
      Location:198244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:115193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200339
      DP; Transcription factor DP

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394760.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      241548..259296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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