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    SNCA synuclein alpha [ Pan troglodytes (chimpanzee) ]

    Gene ID: 461375, updated on 23-Mar-2018
    Official Symbol
    SNCAprovided by VGNC
    Official Full Name
    synuclein alphaprovided by VGNC
    Primary source
    VGNC:VGNC:1998
    See related
    Ensembl:ENSPTRG00000052247
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    See SNCA in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 4 NC_036883.1 (87180341..87294672, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 4 NC_006471.3 (92006811..92126424, complement)

    Chromosome 4 - NC_036883.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene GPRIN family member 3 Neighboring gene multimerin 1 Neighboring gene coiled-coil serine rich protein 1 Neighboring gene thymosin beta-4

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018
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    • Alzheimer's disease, conserved biosystem (from KEGG)
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    • EGFR1 Signaling Pathway, organism-specific biosystem (from WikiPathways)
      EGFR1 Signaling Pathway, organism-specific biosystemThe androgen receptor is a member of the nuclear receptor family of ligand activated transcription factors. These receptors bind to steroid hormones, thyroid hormone, retinoids and vitamin D among ot...
    • Parkinson's disease, organism-specific biosystem (from KEGG)
      Parkinson's disease, organism-specific biosystemParkinson's disease (PD) is a progressive neurodegenerative movement disorder that results primarily from the death of dopaminergic (DA) neurons in the substantia nigra pars compacta (SNc). Mutations...

    Markers

    Homology

    Preferred Names
    alpha-synuclein
    Names
    synuclein, alpha (non A4 component of amyloid precursor)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009158.3NP_001009158.1  alpha-synuclein

      See identical proteins and their annotated locations for NP_001009158.1

      Status: VALIDATED

      Source sequence(s)
      AACZ04021324
      UniProtKB/Swiss-Prot
      P61145
      Related
      ENSPTRP00000090843.1, ENSPTRT00000110874.1
      Conserved Domains (1) summary
      pfam01387
      Location:1110
      Synuclein; Synuclein

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036883.1 Reference Clint_PTRv2 Primary Assembly

      Range
      87180341..87294672 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009447912.3XP_009446187.1  alpha-synuclein isoform X1

      See identical proteins and their annotated locations for XP_009446187.1

      UniProtKB/Swiss-Prot
      P61145
      Conserved Domains (1) summary
      pfam01387
      Location:1110
      Synuclein; Synuclein
    2. XM_009447911.3XP_009446186.1  alpha-synuclein isoform X1

      See identical proteins and their annotated locations for XP_009446186.1

      UniProtKB/Swiss-Prot
      P61145
      Conserved Domains (1) summary
      pfam01387
      Location:1110
      Synuclein; Synuclein
    3. XM_009447913.3XP_009446188.1  alpha-synuclein isoform X1

      See identical proteins and their annotated locations for XP_009446188.1

      UniProtKB/Swiss-Prot
      P61145
      Conserved Domains (1) summary
      pfam01387
      Location:1110
      Synuclein; Synuclein
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