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    LHCB5 light harvesting complex of photosystem II 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826626, updated on 11-Oct-2018

    Summary

    Gene symbol
    LHCB5
    Gene description
    light harvesting complex of photosystem II 5
    Primary source
    Araport:AT4G10340
    Locus tag
    AT4G10340
    Gene type
    protein coding
    RNA name
    light harvesting complex of photosystem II 5
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CHLOROPHYLL PROTEIN 26; CP 26; CP26; F24G24.140; F24G24_140; light harvesting complex of photosystem II 5
    Summary
    photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus

    Genomic context

    See LHCB5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (6408007..6409849)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA synthetase class I (I, L, M and V) family protein Neighboring gene glycine-rich protein Neighboring gene ncRNA Neighboring gene NAC domain containing protein 70

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_117102.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    chlorophyll binding IEA
    Inferred from Electronic Annotation
    more info
     
    chlorophyll binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    nonphotochemical quenching IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    photosynthesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    photosynthesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    photosynthesis, light harvesting in photosystem I IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    photosystem II assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein-chromophore linkage IEA
    Inferred from Electronic Annotation
    more info
     
    response to blue light IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    response to far red light IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    response to light stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    response to red light IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    PSII associated light-harvesting complex II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chloroplast IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chloroplast ISM
    Inferred from Sequence Model
    more info
     
    chloroplast stromal thylakoid IDA
    Inferred from Direct Assay
    more info
     
    chloroplast thylakoid IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chloroplast thylakoid membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    light-harvesting complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photosystem I IEA
    Inferred from Electronic Annotation
    more info
     
    photosystem II antenna complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    plastoglobule IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plastoglobule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    thylakoid IDA
    Inferred from Direct Assay
    more info
    PubMed 
    thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    light harvesting complex of photosystem II 5
    NP_192772.1
    • light harvesting complex of photosystem II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2360 Blast hits to 2295 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6408007..6409849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117102.4NP_192772.1  light harvesting complex of photosystem II 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192772.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XF89
      UniProtKB/TrEMBL
      A0A178UW55
      Conserved Domains (1) summary
      cl02879
      Location:62265
      Chloroa_b-bind; Chlorophyll A-B binding protein
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