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    Taf7l TATA-box binding protein associated factor 7 like [ Mus musculus (house mouse) ]

    Gene ID: 74469, updated on 2-Oct-2018

    Summary

    Official Symbol
    Taf7lprovided by MGI
    Official Full Name
    TATA-box binding protein associated factor 7 likeprovided by MGI
    Primary source
    MGI:MGI:1921719
    See related
    Ensembl:ENSMUSG00000009596 Vega:OTTMUSG00000019305
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Taf2q; 4933438I11Rik
    Expression
    Restricted expression toward placenta adult (RPKM 21.3) See more
    Orthologs

    Genomic context

    See Taf7l in Genome Data Viewer
    Location:
    X; X E3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (134460116..134476525, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (130994655..131011029, complement)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene centromere protein I Neighboring gene dystrophin related protein 2 Neighboring gene STAT3-interacting protein as a repressor pseudogene Neighboring gene translocase of inner mitochondrial membrane 8A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC124181

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    histone acetyltransferase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription regulatory region DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA polymerase II preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    flagellated sperm motility IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    spermatid development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    transcription initiation from RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    NOT chromocenter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    transcription initiation factor TFIID subunit 7-like
    Names
    TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor
    TATA box binding protein (TBP)-associated factor, RNA polymerase II, Q
    TATA box binding protein-associated factor RNA polymerase II subunit Q
    TATA box-binding protein-associated factor 50 kDa
    transcription initiation factor TFIID 50 kDa subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028958.4NP_083234.2  transcription initiation factor TFIID subunit 7-like

      See identical proteins and their annotated locations for NP_083234.2

      Status: VALIDATED

      Source sequence(s)
      AK017109, AW553087, BB871901
      Consensus CDS
      CCDS53184.1
      UniProtKB/Swiss-Prot
      Q9D3R9
      Related
      ENSMUSP00000009740.2, OTTMUSP00000020831, ENSMUST00000009740.8, OTTMUST00000046133
      Conserved Domains (1) summary
      pfam04658
      Location:106285
      TAFII55_N; TAFII55 protein conserved region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

      Range
      134460116..134476525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528610.3XP_006528673.1  transcription initiation factor TFIID subunit 7-like isoform X1

      Conserved Domains (1) summary
      pfam04658
      Location:106249
      TAFII55_N; TAFII55 protein conserved region
    2. XM_006528611.3XP_006528674.1  transcription initiation factor TFIID subunit 7-like isoform X2

      Conserved Domains (1) summary
      pfam04658
      Location:21200
      TAFII55_N; TAFII55 protein conserved region
    3. XM_006528613.3XP_006528676.1  transcription initiation factor TFIID subunit 7-like isoform X3

      UniProtKB/TrEMBL
      B1AV36
      Related
      ENSMUSP00000108849.2, OTTMUSP00000020832, ENSMUST00000113223.2, OTTMUST00000046134
      Conserved Domains (1) summary
      pfam04658
      Location:21164
      TAFII55_N; TAFII55 protein conserved region
    4. XM_006528615.3XP_006528678.1  transcription initiation factor TFIID subunit 7-like isoform X5

      Conserved Domains (1) summary
      cl04653
      Location:3564
      TAF7; TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    5. XM_006528614.3XP_006528677.1  transcription initiation factor TFIID subunit 7-like isoform X4

      Conserved Domains (1) summary
      pfam04658
      Location:106238
      TAFII55_N; TAFII55 protein conserved region
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