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    Spaca1 sperm acrosome associated 1 [ Mus musculus (house mouse) ]

    Gene ID: 67652, updated on 31-Jan-2019

    Summary

    Official Symbol
    Spaca1provided by MGI
    Official Full Name
    sperm acrosome associated 1provided by MGI
    Primary source
    MGI:MGI:1914902
    See related
    Ensembl:ENSMUSG00000028264
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700124L11Rik; 4930540L03Rik
    Expression
    Restricted expression toward testis adult (RPKM 74.4) See more
    Orthologs

    Genomic context

    See Spaca1 in Genome Data Viewer
    Location:
    4; 4 A5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (34024872..34050067, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (34115289..34137042, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 33105 Neighboring gene cannabinoid receptor 1 (brain) Neighboring gene U6 snRNA-associated Sm-like protein LSm3 pseudogene Neighboring gene predicted gene, 33286 Neighboring gene predicted gene, 20764

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acrosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acrosome assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    acrosomal membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acrosomal membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    sperm acrosome membrane-associated protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290443.1NP_001277372.1  sperm acrosome membrane-associated protein 1 isoform 2 precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 3' terminal exon, compared to variant 1. It encodes isoform 2, which has a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK007270, BY450124, BY706285
      Consensus CDS
      CCDS71357.1
      UniProtKB/TrEMBL
      B1AWF1
      Related
      ENSMUSP00000081785.4, ENSMUST00000084734.10
      Conserved Domains (1) summary
      cd13783
      Location:30278
      SPACA1; Sperm acrosome membrane-associated protein 1
    2. NM_026293.3NP_080569.1  sperm acrosome membrane-associated protein 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_080569.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AL732568
      Consensus CDS
      CCDS18026.1
      UniProtKB/Swiss-Prot
      Q9DA48
      UniProtKB/TrEMBL
      B1AWF2
      Related
      ENSMUSP00000029927.5, ENSMUST00000029927.5
      Conserved Domains (1) summary
      cd13783
      Location:30285
      SPACA1; Sperm acrosome membrane-associated protein 1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      34024872..34050067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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