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    Lrrc6 leucine rich repeat containing 6 (testis) [ Mus musculus (house mouse) ]

    Gene ID: 54562, updated on 12-Aug-2018

    Summary

    Official Symbol
    Lrrc6provided by MGI
    Official Full Name
    leucine rich repeat containing 6 (testis)provided by MGI
    Primary source
    MGI:MGI:1859553
    See related
    Ensembl:ENSMUSG00000022375 Vega:OTTMUSG00000037898
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    LRTP
    Expression
    Biased expression in testis adult (RPKM 9.8), cortex adult (RPKM 1.2) and 1 other tissue See more
    Orthologs

    Genomic context

    See Lrrc6 in Genome Data Viewer
    Location:
    15; 15 D1-D2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (66379858..66500910, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (66211420..66332472, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41340 Neighboring gene ribosome production factor 2 homolog pseudogene Neighboring gene predicted gene, 31006 Neighboring gene transmembrane protein 71 Neighboring gene PHD finger protein 20-like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cilium movement ISO
    Inferred from Sequence Orthology
    more info
     
    cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    epithelial cilium movement involved in determination of left/right asymmetry ISO
    Inferred from Sequence Orthology
    more info
     
    flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
     
    inner dynein arm assembly ISO
    Inferred from Sequence Orthology
    more info
     
    male gonad development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    motile cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    motile cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    outer dynein arm assembly ISO
    Inferred from Sequence Orthology
    more info
     
    reproductive system development ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cilium ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    motile cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    protein tilB homolog
    Names
    leucine-rich repeat-containing protein 6
    leucine-rich testis-specific protein
    protein TILB homolog
    testis-specific leucine-rich repeat protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019457.2NP_062330.1  protein tilB homolog

      See identical proteins and their annotated locations for NP_062330.1

      Status: VALIDATED

      Source sequence(s)
      BC046277, CJ046721
      Consensus CDS
      CCDS49620.1
      UniProtKB/Swiss-Prot
      O88978
      Related
      ENSMUSP00000023006.6, OTTMUSP00000054804, ENSMUST00000023006.6, OTTMUST00000097713
      Conserved Domains (3) summary
      sd00031
      Location:2345
      LRR_1; leucine-rich repeat [structural motif]
      pfam12799
      Location:4686
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:4698
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      66379858..66500910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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