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    Hoxb7 homeo box B7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 497985, updated on 18-Apr-2019

    Summary

    Official Symbol
    Hoxb7provided by RGD
    Official Full Name
    homeo box B7provided by RGD
    Primary source
    RGD:1559918
    See related
    Ensembl:ENSRNOG00000007611
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    R1b; Hox2r1b
    Summary
    mouse homolog is a DNA-binding homeobox transcription factor; may play a role in development of the haemopoietic system [RGD, Feb 2006]
    Expression
    Biased expression in Kidney (RPKM 127.2), Adrenal (RPKM 80.4) and 3 other tissues See more
    Orthologs

    Genomic context

    See Hoxb7 in Genome Data Viewer
    Location:
    10q26
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (84135224..84138642)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (83937956..83941374)

    Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene homeo box B9 Neighboring gene homeo box B8 Neighboring gene homeobox B5 and homeobox B6, opposite strand Neighboring gene homeo box B6 Neighboring gene homeo box B5

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear body IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    homeobox protein Hox-B7
    Names
    homeobox gene B7
    homeobox protein R1B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017480.1NP_001017480.1  homeobox protein Hox-B7

      See identical proteins and their annotated locations for NP_001017480.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079340
      UniProtKB/Swiss-Prot
      P18864
      Related
      ENSRNOP00000033609.3, ENSRNOT00000031035.4
      Conserved Domains (1) summary
      pfam00046
      Location:141193
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

      Range
      84135224..84138642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000078.1 Alternate Rn_Celera

      Range
      80018777..80022203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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