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    Actl6b actin-like 6B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288563, updated on 2-Oct-2018

    Summary

    Official Symbol
    Actl6bprovided by RGD
    Official Full Name
    actin-like 6Bprovided by RGD
    Primary source
    RGD:1307763
    See related
    Ensembl:ENSRNOG00000001408
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Actl6
    Expression
    Restricted expression toward (RPKM 112.5) See more
    Orthologs

    Genomic context

    See Actl6b in Genome Data Viewer
    Location:
    12q12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (22194595..22211107, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 12 NC_005111.3 (24211502..24227916, complement)

    Chromosome 12 - NC_005111.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352432 Neighboring gene motile sperm domain containing 3 Neighboring gene transferrin receptor 2 Neighboring gene small nuclear ribonucleoprotein Sm D1 pseudogene Neighboring gene G protein subunit beta 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin remodeling ISO
    Inferred from Sequence Orthology
    more info
     
    nervous system development ISO
    Inferred from Sequence Orthology
    more info
     
    spinal cord development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
     
    SWI/SNF complex ISO
    Inferred from Sequence Orthology
    more info
     
    cellular_component ND
    No biological Data available
    more info
     
    nBAF complex ISO
    Inferred from Sequence Orthology
    more info
     
    nBAF complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    actin-like protein 6B
    Names
    BAF53B
    BRG1-associated factor 53B
    actin-like 6

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105917.1NP_001099387.2  actin-like protein 6B

      See identical proteins and their annotated locations for NP_001099387.2

      Status: PROVISIONAL

      Source sequence(s)
      CH473973
      UniProtKB/Swiss-Prot
      P86173
      Related
      ENSRNOP00000001910.5, ENSRNOT00000001910.7
      Conserved Domains (1) summary
      pfam00022
      Location:11426
      Actin; Actin

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005111.4 Reference Rnor_6.0 Primary Assembly

      Range
      22194595..22211107 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006249120.2XP_006249182.1  actin-like protein 6B isoform X1

      Conserved Domains (2) summary
      pfam00022
      Location:11444
      Actin; Actin
      cl17037
      Location:10443
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    Alternate Rn_Celera

    Genomic

    1. AC_000080.1 Alternate Rn_Celera

      Range
      20930049..20946506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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