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    Cog5 component of oligomeric golgi complex 5 [ Mus musculus (house mouse) ]

    Gene ID: 238123, updated on 23-May-2018

    Summary

    Official Symbol
    Cog5provided by MGI
    Official Full Name
    component of oligomeric golgi complex 5provided by MGI
    Primary source
    MGI:MGI:2145130
    See related
    Ensembl:ENSMUSG00000035933
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GTC90; C87247; D18362; GOLTC1; 5430405C01Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 11.7), mammary gland adult (RPKM 11.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cog5 in Genome Data Viewer
    Location:
    12; 12 A2-A3
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (31654868..31937631)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (32339734..32622495)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene B cell receptor associated protein 29 Neighboring gene dihydrouridine synthase 4-like (S. cerevisiae) Neighboring gene G protein-coupled receptor 22 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene predicted gene, 35666 Neighboring gene high mobility group box transcription factor 1 Neighboring gene protein kinase, cAMP dependent regulatory, type II beta Neighboring gene predicted gene, 33111

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    inter-Golgi cisterna vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
     
    intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi transport complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi transport complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    conserved oligomeric Golgi complex subunit 5
    Names
    COG complex subunit 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163126.1NP_001156598.1  conserved oligomeric Golgi complex subunit 5

      See identical proteins and their annotated locations for NP_001156598.1

      Status: VALIDATED

      Source sequence(s)
      AK030656, BM244396, CA316530, CA580184, CX240209
      Consensus CDS
      CCDS49046.1
      UniProtKB/Swiss-Prot
      Q8C0L8
      Related
      ENSMUSP00000044797.4, ENSMUST00000036862.4
      Conserved Domains (2) summary
      pfam10392
      Location:35158
      COG5; Golgi transport complex subunit 5
      cl00549
      Location:645749
      ABC_membrane; ABC transporter transmembrane region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      31654868..31937631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011243868.2XP_011242170.1  conserved oligomeric Golgi complex subunit 5 isoform X1

      See identical proteins and their annotated locations for XP_011242170.1

      UniProtKB/Swiss-Prot
      Q8C0L8
      Conserved Domains (2) summary
      pfam10392
      Location:35158
      COG5; Golgi transport complex subunit 5
      cl00549
      Location:645749
      ABC_membrane; ABC transporter transmembrane region
    2. XM_006515084.3XP_006515147.1  conserved oligomeric Golgi complex subunit 5 isoform X3

      Conserved Domains (2) summary
      pfam10392
      Location:35158
      COG5; Golgi transport complex subunit 5
      cl00549
      Location:591695
      ABC_membrane; ABC transporter transmembrane region
    3. XM_006515083.1XP_006515146.1  conserved oligomeric Golgi complex subunit 5 isoform X2

      Conserved Domains (2) summary
      pfam10392
      Location:35158
      COG5; Golgi transport complex subunit 5
      cl00549
      Location:645749
      ABC_membrane; ABC transporter transmembrane region
    4. XM_017315052.1XP_017170541.1  conserved oligomeric Golgi complex subunit 5 isoform X4

      Conserved Domains (2) summary
      cl00549
      Location:360464
      ABC_membrane; ABC transporter transmembrane region
      cl10013
      Location:41108
      Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    5. XM_011243869.2XP_011242171.1  conserved oligomeric Golgi complex subunit 5 isoform X4

      Conserved Domains (2) summary
      cl00549
      Location:360464
      ABC_membrane; ABC transporter transmembrane region
      cl10013
      Location:41108
      Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    6. XM_017315053.1XP_017170542.1  conserved oligomeric Golgi complex subunit 5 isoform X5

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