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    ZNF836 zinc finger protein 836 [ Homo sapiens (human) ]

    Gene ID: 162962, updated on 15-Jun-2019

    Summary

    Official Symbol
    ZNF836provided by HGNC
    Official Full Name
    zinc finger protein 836provided by HGNC
    Primary source
    HGNC:HGNC:34333
    See related
    Ensembl:ENSG00000196267
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in adrenal (RPKM 5.5), ovary (RPKM 1.8) and 24 other tissues See more
    Orthologs

    Genomic context

    See ZNF836 in Genome Data Viewer
    Location:
    19q13.41
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 19 NC_000019.10 (52154050..52171683, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (52658039..52674896, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 616 Neighboring gene ribosomal protein L37 pseudogene 23 Neighboring gene protein phosphatase 2 scaffold subunit Aalpha Neighboring gene uncharacterized LOC105372449 Neighboring gene microRNA 6801 Neighboring gene vomeronasal 1 receptor 99 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ16287

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    DNA-binding transcription factor activity, RNA polymerase II-specific ISA
    Inferred from Sequence Alignment
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102657.3NP_001096127.1  zinc finger protein 836

      See identical proteins and their annotated locations for NP_001096127.1

      Status: VALIDATED

      Source sequence(s)
      AC010320, AC011468
      Consensus CDS
      CCDS46162.1
      UniProtKB/Swiss-Prot
      Q6ZNA1
      Related
      ENSP00000470239.1, ENST00000597252.5
      Conserved Domains (6) summary
      smart00349
      Location:848
      KRAB; krueppel associated box
      COG5048
      Location:272648
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:304324
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:696714
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:847
      KRAB; KRAB box
      pfam13465
      Location:372397
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

      Range
      52154050..52171664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011526559.3XP_011524861.1  zinc finger protein 836 isoform X1

      See identical proteins and their annotated locations for XP_011524861.1

      UniProtKB/Swiss-Prot
      Q6ZNA1
      Conserved Domains (6) summary
      smart00349
      Location:848
      KRAB; krueppel associated box
      COG5048
      Location:272648
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:304324
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:696714
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:847
      KRAB; KRAB box
      pfam13465
      Location:372397
      zf-H2C2_2; Zinc-finger double domain
    2. XM_011526558.3XP_011524860.1  zinc finger protein 836 isoform X1

      See identical proteins and their annotated locations for XP_011524860.1

      UniProtKB/Swiss-Prot
      Q6ZNA1
      Conserved Domains (6) summary
      smart00349
      Location:848
      KRAB; krueppel associated box
      COG5048
      Location:272648
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:304324
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:696714
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:847
      KRAB; KRAB box
      pfam13465
      Location:372397
      zf-H2C2_2; Zinc-finger double domain
    3. XM_017026389.2XP_016881878.1  zinc finger protein 836 isoform X2

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