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    TMEM92 transmembrane protein 92 [ Homo sapiens (human) ]

    Gene ID: 162461, updated on 17-Jun-2019

    Summary

    Official Symbol
    TMEM92provided by HGNC
    Official Full Name
    transmembrane protein 92provided by HGNC
    Primary source
    HGNC:HGNC:26579
    See related
    Ensembl:ENSG00000167105
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in small intestine (RPKM 10.1), duodenum (RPKM 7.9) and 7 other tissues See more
    Orthologs

    Genomic context

    See TMEM92 in Genome Data Viewer
    Location:
    17q21.33
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (50271406..50281485)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (48348767..48358846)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371819 Neighboring gene uncharacterized LOC105371822 Neighboring gene TMEM92 antisense RNA 1 Neighboring gene xylosyltransferase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • FLJ33318

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_054733.1 RefSeqGene

      Range
      5001..15080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001168215.1NP_001161687.1  transmembrane protein 92 precursor

      See identical proteins and their annotated locations for NP_001161687.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC015909, AK090637, AW293202, AY358204
      Consensus CDS
      CCDS11562.1
      UniProtKB/Swiss-Prot
      Q6UXU6
      Related
      ENSP00000300433.3, ENST00000300433.7
      Conserved Domains (1) summary
      pfam11669
      Location:34127
      WBP-1; WW domain-binding protein 1
    2. NM_153229.3NP_694961.2  transmembrane protein 92 precursor

      See identical proteins and their annotated locations for NP_694961.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC015909, AK090637, AW293202, DB072318
      Consensus CDS
      CCDS11562.1
      UniProtKB/Swiss-Prot
      Q6UXU6
      Related
      ENSP00000425144.1, ENST00000507382.2
      Conserved Domains (1) summary
      pfam11669
      Location:34127
      WBP-1; WW domain-binding protein 1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

      Range
      50271406..50281485
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006721730.3XP_006721793.1  transmembrane protein 92 isoform X1

      See identical proteins and their annotated locations for XP_006721793.1

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