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    Opn1sw opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) [ Mus musculus (house mouse) ]

    Gene ID: 12057, updated on 9-Oct-2018

    Summary

    Official Symbol
    Opn1swprovided by MGI
    Official Full Name
    opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)provided by MGI
    Primary source
    MGI:MGI:99438
    See related
    Ensembl:ENSMUSG00000058831 Vega:OTTMUSG00000022747
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bcp; AW551857
    Expression
    Biased expression in bladder adult (RPKM 1.4), limb E14.5 (RPKM 0.3) and 8 other tissues See more
    Orthologs

    Genomic context

    See Opn1sw in Genome Data Viewer
    Location:
    6; 6 A3.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (29376671..29380513, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (29326671..29330513, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 71, member F2 Neighboring gene family with sequence similarity 71, member F1 Neighboring gene calumenin Neighboring gene nuclear encoded tRNA proline 6 (anticodon AGG) Neighboring gene coiled-coil domain containing 136

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    G protein-coupled photoreceptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    photoreceptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    G protein-coupled receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cellular response to light stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phototransduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein-chromophore linkage IEA
    Inferred from Electronic Annotation
    more info
     
    response to stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell body ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    photoreceptor outer segment IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    photoreceptor outer segment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor outer segment ISO
    Inferred from Sequence Orthology
    more info
     
    terminal bouton ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    short-wave-sensitive opsin 1
    Names
    BOP
    S opsin
    SWS opsin
    UV cone pigment
    blue cone opsin
    blue cone photoreceptor pigment
    blue cone pigment
    blue opsin
    blue visual pigment protein
    blue-sensitive opsin
    blue/UV opsin
    short wavelength sensitive opsin
    short wavelength-sensitive cone opsin

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007538.3NP_031564.1  short-wave-sensitive opsin 1

      See identical proteins and their annotated locations for NP_031564.1

      Status: VALIDATED

      Source sequence(s)
      BC026021, CK620498
      Consensus CDS
      CCDS19959.1
      UniProtKB/Swiss-Prot
      P51491
      Related
      ENSMUSP00000079289.6, OTTMUSP00000026075, ENSMUST00000080428.12, OTTMUST00000054593
      Conserved Domains (2) summary
      pfam00001
      Location:50301
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:38319
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      29376671..29380513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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