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    Art2a-ps ADP-ribosyltransferase 2a, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 11871, updated on 24-Jul-2018

    Summary

    Official Symbol
    Art2a-psprovided by MGI
    Official Full Name
    ADP-ribosyltransferase 2a, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:107546
    See related
    Ensembl:ENSMUSG00000092517 Vega:OTTMUSG00000033439
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rt6; Rt-6; ARTC2; Art2a; Ly92a; Rt6-1
    Expression
    Biased expression in large intestine adult (RPKM 1.5), spleen adult (RPKM 0.9) and 9 other tissues See more

    Genomic context

    See Art2a-ps in Genome Data Viewer
    Location:
    7 E2; 7 54.6 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (101552453..101560865, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (108700967..108709379, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 2A, cGMP-stimulated Neighboring gene microRNA 139 Neighboring gene predicted gene, 35363 Neighboring gene uncharacterized LOC102638993 Neighboring gene ribosomal protein L6 pseudogene Neighboring gene ADP-ribosyltransferase 2b Neighboring gene predicted gene, 45995

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    NAD+ ADP-ribosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    peptidyl-arginine ADP-ribosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein ADP-ribosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    T-cell ecto-ADP-ribosyltransferase 1
    Names
    ADP-ribosyltransferase C2 and C3 toxin-like 2
    NAD(+) glycohydrolase
    T-cell NAD(P)(+)--arginine ADP-ribosyltransferase 1
    T-cell differentiation marker Rt6 homolog 1
    T-cell mono(ADP-ribosyl)transferase 1
    mono(ADP-ribosyl)transferase 2A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007490.1NP_031516.1  T-cell ecto-ADP-ribosyltransferase 1 precursor

      See identical proteins and their annotated locations for NP_031516.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1, coding) encodes the functional protein. This variant is found in BALB/c mice but not in C57BL/6J mice.
      Source sequence(s)
      X52991
      UniProtKB/Swiss-Prot
      P17981
      Conserved Domains (1) summary
      pfam01129
      Location:27242
      ART; NAD:arginine ADP-ribosyltransferase

    RNA

    1. NR_033804.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1, non-coding) is represented as non-coding because the use of the 5'-most supported translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD). This transcript is found in C57BL/6J mice but not in BALB/c mice.
      Source sequence(s)
      AK018555
      Related
      ENSMUST00000173420.1, OTTMUST00000083995

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      101552453..101560865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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