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    SWP82 Swp82p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 850495, updated on 13-Apr-2024

    Summary

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    Gene symbol
    SWP82
    Gene description
    Swp82p
    Primary source
    SGD:S000001845
    Locus tag
    YFL049W
    See related
    AllianceGenome:SGD:S000001845
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to be involved in positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleus. Part of SWI/SNF complex. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See SWP82 in Genome Data Viewer
    Location:
    chromosome: VI
    Exon count:
    1
    Sequence:
    Chromosome: VI; NC_001138.5 (36803..38674)

    Chromosome VI - NC_001138.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene putative Mg(2+) transporter ALR2 Neighboring gene Emp47p Neighboring gene GTPase-activating protein RGD2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001138.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression profiles of transcripts from 126 open reading frames in the entire chromosome VI of Saccharomyces cerevisiae by systematic northern analyses. Naitou M, et al. Yeast, 1997 Oct. PMID 9364751
    2. SWI/SNF senses carbon starvation with a pH-sensitive low-complexity sequence. Gutierrez JI, et al. Elife, 2022 Feb 7. PMID 35129437, Free PMC Article
    3. The SnAC domain of SWI/SNF is a histone anchor required for remodeling. Sen P, et al. Mol Cell Biol, 2013 Jan. PMID 23149935, Free PMC Article
    4. The Saccharomyces cerevisiae histone chaperone Rtt106 mediates the cell cycle recruitment of SWI/SNF and RSC to the HIR-dependent histone genes. Ferreira ME, et al. PLoS One, 2011. PMID 21698254, Free PMC Article
    5. Transcriptional activators in yeast. Titz B, et al. Nucleic Acids Res, 2006. PMID 16464826, Free PMC Article

    See all (65) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables chromatin DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromatin remodeling IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RSC-type complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of SWI/SNF complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Swp82p
    NP_116605.1
    • Member of the SWI/SNF chromatin remodeling complex; has an as yet unidentified role in the complex; has identifiable counterparts in closely related yeast species; abundantly expressed in many growth conditions; paralog of Npl6p; relocates to the cytosol under hypoxic conditions

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001138.5 Reference assembly

      Range
      36803..38674
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179918.1 → NP_116605.1  TPA: Swp82p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_116605.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VTI1, P43554
      UniProtKB/TrEMBL
      A0A8H8UL37, C7GY65, C8Z7N4, N1P313
      Conserved Domains (1) summary
      pfam08624
      Location:83 → 219
      CRC_subunit; Chromatin remodelling complex Rsc7/Swp82 subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    7C4J_E.1
    P43554.1

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