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    AT1G63080 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842611, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G63080
    Gene description
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    Araport:AT1G63080
    Locus tag
    AT1G63080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16M19.17; F16M19_17
    Summary
    Transacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.
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    Genomic context

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    See AT1G63080 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (23387574..23390838, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ribosome biogenesis NEP1-like protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene phloem protein 2-A11 Neighboring gene GRAS family transcription factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001334064.1
    NM_104986.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_001319297.1
    • Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 67700 Blast hits to 15348 proteins in 310 species: Archae - 4; Bacteria - 76; Metazoa - 1251; Fungi - 1270; Plants - 62359; Viruses - 0; Other Eukaryotes - 2740 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23387574..23390838 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334065.1 → NP_001321279.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAN5

    2. NM_001334064.1 → NP_001319297.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAN5

    3. NM_104986.3 → NP_176496.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176496.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAN5
      Conserved Domains (4) summary
      TIGR00756
      Location:241 → 275
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:312 → 339
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:374 → 407
      PPR_1; PPR repeat
      pfam13041
      Location:308 → 356
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAN5.1

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