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    AT1G53330 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841768, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT1G53330
    Gene description
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    Araport:AT1G53330
    Locus tag
    AT1G53330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12M16.23; F12M16_23
    Summary
    encodes a member of the pentatricopeptide repeat (PPR) gene family. T-DNA insertion mutants had a complex phenotypic expression, ranging from embryo lethal to seedling lethal, to just subtle changes.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (19895967..19898360)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tubby like protein 7 Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene DHHA1 domain protein Neighboring gene Disease resistance protein (CC-NBS-LRR class) family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of a novel semi-lethal Arabidopsis thaliana mutant of gene for pentatricopeptide (PPR) repeat-containing protein. Kocábek T, et al. Genetica, 2006 Sep-Nov. PMID 17028967
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within fruit development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within shoot system development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_175740.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 42827 Blast hits to 13568 proteins in 292 species: Archae - 4; Bacteria - 35; Metazoa - 401; Fungi - 615; Plants - 40434; Viruses - 0; Other Eukaryotes - 1338 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19895967..19898360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333586.1 → NP_001321837.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AS46

    2. NM_104212.2 → NP_175740.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175740.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9MAG8
      UniProtKB/TrEMBL
      A0A178WDQ5
      Conserved Domains (4) summary
      TIGR00756
      Location:153 → 186
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:260 → 287
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:287 → 320
      PPR_1; PPR repeat
      pfam13041
      Location:150 → 199
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9MAG8.1

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