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    AT1G33680 KH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840259, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT1G33680
    Gene description
    KH domain-containing protein
    Primary source
    Araport:AT1G33680
    Locus tag
    AT1G33680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M2.18; F14M2_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (12203945..12208698)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Beta-glucosidase, GBA2 type family protein Neighboring gene ncRNA Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_103088.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    KH domain-containing protein
    NP_174629.3
    • KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 52223 Blast hits to 31714 proteins in 1554 species: Archae - 80; Bacteria - 6342; Metazoa - 24247; Fungi - 9116; Plants - 4309; Viruses - 323; Other Eukaryotes - 7806 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12203945..12208698
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103088.4 → NP_174629.3  KH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174629.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WLJ7, Q0WLY0
      Conserved Domains (2) summary
      cd00105
      Location:322 → 386
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam00013
      Location:233 → 298
      KH_1; KH domain
    Nucleotide Protein
    Heading Accession and Version

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