Format

Send to:

Choose Destination
    • Showing Current items.

    CDKD1;3 cyclin-dependent kinase D1;3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838384, updated on 10-Oct-2019

    Summary

    Gene symbol
    CDKD1;3
    Gene description
    cyclin-dependent kinase D1;3
    Primary source
    Araport:AT1G18040
    Locus tag
    AT1G18040
    Gene type
    protein coding
    RNA name
    cyclin-dependent kinase D1;3
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT;CDCKD;3; CAK2AT; cyclin-dependent kinase D1;3; CYCLIN-DEPENDENT KINASE D1;3; T10F20.5; T10F20_5

    Genomic context

    See CDKD1;3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (6206871..6209528, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FMN-linked oxidoreductases superfamily protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SWAP/surp RNA-binding domain protein Neighboring gene microbial collagenase

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_101666.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase II CTD heptapeptide repeat kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cyclin-dependent protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein phosphorylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of cell cycle TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISM
    Inferred from Sequence Model
    more info
     
    transcription factor TFIIK complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    cyclin-dependent kinase D1;3
    NP_173244.1
    • cyclin-dependent kinase D1;3 (CDKD1;3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;1 (TAIR:AT1G73690.1); Has 119527 Blast hits to 118054 proteins in 4087 species: Archae - 74; Bacteria - 13556; Metazoa - 44153; Fungi - 12365; Plants - 29368; Viruses - 395; Other Eukaryotes - 19616 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6206871..6209528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101666.3NP_173244.1  cyclin-dependent kinase D1;3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173244.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LMT0
      UniProtKB/TrEMBL
      A0A178WHV0
      Conserved Domains (2) summary
      PTZ00024
      Location:18305
      PTZ00024; cyclin-dependent protein kinase; Provisional
      cd07841
      Location:11305
      STKc_CDK7; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7
    Support Center